Comparison of different protocols for the extraction of microbial DNA from reef corals

This study aimed to test different protocols for the extraction of microbial DNA from the coral Mussismilia harttii. Four different commercial kits were tested, three of them based on methods for DNA extraction from soil (FastDNA SPIN Kit for soil, MP Bio, PowerSoil DNA Isolation Kit, MoBio, and ZR Soil Microbe DNA Kit, Zymo Research) and one kit for DNA extraction from plants (UltraClean Plant DNA Isolation Kit, MoBio). Five polyps of the same colony of M. harttii were macerated and aliquots were submitted to DNA extraction by the different kits. After extraction, the DNA was quantified and PCR-DGGE was used to study the molecular fingerprint of Bacteria and Eukarya. Among the four kits tested, the ZR Soil Microbe DNA Kit was the most efficient with respect to the amount of DNA extracted, yielding about three times more DNA than the other kits. Also, we observed a higher number and intensities of DGGE bands for both Bacteria and Eukarya with the same kit. Considering these results, we suggested that the ZR Soil Microbe DNA Kit is the best adapted for the study of the microbial communities of corals.

Zooplankton in littoral waters of a tropical lake: a revisited biodiversity

The present study was carried out in Lake Dom Helvécio, in the state of Minas Gerais, with two main objectives: to demonstrate the contribution of the littoral zone, in order to better characterize zooplankton fauna; and to assess the distribution of zooplankton species in different habitats, i.e., the littoral zone with and without aquatic vegetation. The samples were collected in February and July 2006, throughout the littoral zone of the lake, in areas with and without aquatic vegetation. We identified a total of 188 species, of which 130 are new records for Lake Dom Helvécio. One hundred and eighty-four species were identified in the littoral zone with aquatic vegetation, and 117 in the zone with no vegetation. The higher zooplankton richness in areas of the littoral zone with aquatic vegetation can be related to the greater environmental heterogeneity. Compared to previous studies on the littoral zones of lakes along the middle River Doce, the present study expended greater sampling effort, and identified many more species. In relation to biological conservation, this study demonstrated the importance of the littoral zone for better characterization and conservation of the zooplankton fauna, especially when it is colonized by aquatic vegetation. Underestimating the richness of species may provide inaccurate data on the biota, as well as on the ecological conditions in an environment.

O presente estudo foi realizado no lago Dom Helvécio (MG) tendo como principais objetivos: demonstrar a contribuição da região litorânea para uma melhor caracterização da fauna zooplanctônica, avaliar a distribuição destas espécies em diferentes habitats (região litorânea com e sem vegetação aquática). As amostras foram coletadas nos meses de fevereiro e julho de 2006, ao longo da região litorânea, em pontos amostrais com e sem vegetação aquática. Um total de 188 espécies foi identificado. Desses organismos, 130 representaram novos registros para o lago Dom Helvécio. Foram identificadas 184 espécies na região litorânea com vegetação aquática e 117 na região litorânea sem vegetação. A maior riqueza em espécies zooplanctônicas na região litorânea com vegetação aquática está relacionada com a maior heterogeneidade ambiental. Quando comparado aos estudos realizados anteriormente na região litorânea de lagos do médio rio Doce, este estudo destaca-se pelo maior esforço amostral e número de espécies identificadas. No tocante à conservação biológica, o presente estudo mostrou a importância da região litorânea, especialmente quando colonizada por vegetação aquática para uma melhor caracterização e conservação da fauna zooplanctônica. A riqueza em espécies subestimada pode fornecer dados irreais sobre a biota, bem como das condições ecológicas de um ambiente.